STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0767KEGG: shl:Shal_2645 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Slin_2314
PFAM: DoxX family protein; KEGG: gme:Gmet_3019 methylamine utilization protein MauE, putative.
 
      0.899
Slin_0766
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sbn:Sbal195_1394 peptidase S9 prolyl oligopeptidase.
  
    0.565
Slin_5373
PFAM: NmrA family protein; KEGG: hypothetical protein.
 
    0.528
Slin_2749
PFAM: NmrA family protein; short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein.
  
     0.485
Slin_4046
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pna:Pnap_4585 phosphoadenosine phosphosulfate reductase.
  
     0.452
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.