STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0771N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sun:SUN_1244 hypothetical protein. (229 aa)    
Predicted Functional Partners:
Slin_5441
Hypothetical protein; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A.
   
 0.777
Slin_4656
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: scl:sce2529 cyclopropane-fatty-acyl- phospholipid synthase.
  
     0.571
Slin_0273
PFAM: RagB/SusD domain protein.
  
     0.504
Slin_5444
PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: son:SO_2394 penicillin-binding protein 4.
  
   
 0.477
Slin_0770
PFAM: Chorismate binding-like; KEGG: dps:DP0254 isochorismate synthase (MenF).
       0.457
Slin_0276
PFAM: RagB/SusD domain protein.
  
     0.455
Slin_2885
PFAM: protein of unknown function DUF1460; KEGG: sat:SYN_02612 putative cytoplasmic protein.
 
   
 0.446
Slin_1252
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: pca:Pcar_1511 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.437
Slin_6146
PFAM: fatty acid hydroxylase; KEGG: oan:Oant_3860 hypothetical protein.
  
     0.421
Slin_3623
KEGG: pat:Patl_2873 hypothetical protein.
  
     0.403
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.