STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0809KEGG: hypothetical protein. (112 aa)    
Predicted Functional Partners:
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ppr:PBPRA1085 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.871
Slin_2272
Hypothetical protein.
 
    0.740
Slin_0808
Hypothetical protein.
       0.682
Slin_0521
KEGG: bba:Bd3524 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
   
 
 0.588
Slin_0810
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: sat:SYN_02393 peptidylarginine deiminase related enzyme; Belongs to the agmatine deiminase family.
       0.511
Slin_0807
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pfo:Pfl01_5133 PpiC-type peptidyl-prolyl cis- trans isomerase.
       0.482
Slin_0253
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bpy:Bphyt_5232 xylose isomerase domain protein TIM barrel.
  
     0.412
hypA
Hydrogenase expression/synthesis HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
     0.411
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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