STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0823PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00858 TonB-dependent receptor. (817 aa)    
Predicted Functional Partners:
Slin_1298
Hypothetical protein.
  
   
 0.646
Slin_2401
PFAM: metallophosphoesterase; KEGG: gme:Gmet_2776 metallophosphoesterase.
  
     0.573
Slin_1307
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: scl:sce3596 hypothetical protein.
  
     0.532
Slin_3521
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_2085 TonB family protein.
  
   0.523
Slin_3522
TIGRFAM: TonB family protein; KEGG: mxa:MXAN_6485 ferric siderophore transporter, periplasmic energy transduction protein TonB.
  
   0.514
Slin_0475
Hypothetical protein.
  
     0.509
Slin_2312
Hypothetical protein; KEGG: bcj:BCAM2418 putative haemagglutinin-related autotransporter protein.
  
     0.508
Slin_0822
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_1458 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.499
Slin_0824
PFAM: DoxX family protein; KEGG: bvi:Bcep1808_6370 DoxX family protein.
       0.497
Slin_3523
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mxa:MXAN_6485 ferric siderophore transporter, periplasmic energy transduction protein TonB.
  
   0.486
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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