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Slin_0823 protein (Spirosoma linguale) - STRING interaction network
"Slin_0823" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0823TonB-dependent receptor (817 aa)    
Predicted Functional Partners:
Slin_2312
Hypothetical protein (526 aa)
   
          0.689
Slin_2385
Hypothetical protein (901 aa)
   
          0.654
Slin_3442
Hypothetical protein (248 aa)
   
          0.640
Slin_0475
Hypothetical protein (195 aa)
   
          0.628
Slin_2914
TonB-dependent receptor plug (800 aa)
   
          0.625
Slin_6188
TonB family protein (804 aa)
   
          0.619
Slin_1227
TonB-dependent receptor plug (923 aa)
   
          0.617
Slin_2316
Hypothetical protein (179 aa)
   
          0.612
Slin_5733
TonB-dependent receptor plug (804 aa)
   
          0.596
Slin_5636
TonB-dependent receptor (793 aa)
   
          0.593
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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