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Slin_0882 protein (Spirosoma linguale) - STRING interaction network
"Slin_0882" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0882Short-chain dehydrogenase/reductase SDR (262 aa)    
Predicted Functional Partners:
Slin_0883
Hypothetical protein (107 aa)
 
          0.942
Slin_0881
HxlR family transcriptional regulator (122 aa)
 
          0.709
Slin_0594
Hypothetical protein (1053 aa)
   
          0.531
Slin_0637
Hypothetical protein (1066 aa)
   
          0.524
Slin_0884
Hypothetical protein (322 aa)
              0.517
Slin_1094
ABC transporter (584 aa)
   
          0.452
Slin_2966
PKD domain-containing protein (531 aa)
   
          0.429
Slin_2785
4-amino-4-deoxy-L-arabinose transferase-like protein (502 aa)
   
          0.409
Slin_1095
ABC transporter (587 aa)
   
          0.403
Slin_5616
Hypothetical protein (451 aa)
   
          0.401
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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