STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0882PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mmw:Mmwyl1_0350 short chain dehydrogenase. (262 aa)    
Predicted Functional Partners:
Slin_0883
KEGG: reh:H16_B1991 hypothetical protein.
 
     0.901
Slin_0881
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: abu:Abu_0028 hypothetical protein.
 
     0.635
Slin_5413
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll2196 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.626
Slin_0884
KEGG: xcv:XCV2118 putative secreted protein.
       0.454
Slin_5012
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.