STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0901PFAM: Radical SAM domain protein; KEGG: pzu:PHZ_c2389 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Slin_0899
Hypothetical protein.
       0.773
Slin_0900
Hypothetical protein.
       0.773
Slin_0897
PFAM: Radical SAM domain protein; KEGG: cvi:CV_0072 hypothetical protein.
 
     0.657
Slin_6052
PFAM: sulfatase; KEGG: mno:Mnod_8255 sulfatase.
 
 
 0.537
Slin_0583
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
 
   0.535
Slin_5003
PFAM: sulfatase; KEGG: sil:SPO3286 arylsulfatase.
 
 
 0.531
Slin_6288
PFAM: sulfatase; KEGG: swd:Swoo_3661 sulfatase.
 
 
 0.525
Slin_4996
PFAM: sulfatase; KEGG: swd:Swoo_3660 sulfatase.
 
 
 0.516
Slin_0345
PFAM: sulfatase; KEGG: swd:Swoo_3661 sulfatase.
 
 
 0.509
Slin_0898
Hypothetical protein.
       0.509
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.