STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0950PFAM: Cupin 2 conserved barrel domain protein; KEGG: hypothetical protein. (389 aa)    
Predicted Functional Partners:
Slin_6120
KEGG: hypothetical protein.
  
     0.703
Slin_0496
KEGG: predicted protein.
  
     0.655
Slin_0610
PFAM: protein of unknown function DUF6 transmembrane; KEGG: fph:Fphi_1728 drug/metabolite transporter superfamily protein.
 
  
 0.588
Slin_4859
KEGG: ade:Adeh_3225 hypothetical protein.
  
     0.549
Slin_1933
KEGG: mxa:MXAN_7111 hypothetical protein.
  
     0.531
Slin_4612
KEGG: plu:plu3301 hypothetical protein.
  
     0.524
Slin_5223
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1194 major facilitator transporter.
  
     0.495
Slin_5923
Hypothetical protein; KEGG: pha:PSHAb0321 putative enzyme with ATPase activity.
  
     0.462
Slin_1644
Hypothetical protein; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
  
     0.443
Slin_6012
PFAM: Helix-turn-helix type 11 domain protein; KEGG: ilo:IL0047 DeoR family transcriptional regulator.
  
     0.436
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.