STRINGSTRING
Slin_0994 protein (Spirosoma linguale) - STRING interaction network
"Slin_0994" - Cytochrome-c peroxidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0994Cytochrome-c peroxidase (626 aa)    
Predicted Functional Partners:
Slin_2382
Hypothetical protein (498 aa)
 
          0.769
Slin_0993
tRNA/rRNA methyltransferase SpoU (248 aa)
              0.738
Slin_0992
Surface antigen (D15) (875 aa)
              0.571
Slin_3571
Oxygen-independent coproporphyrinogen III oxidase (460 aa)
   
     
  0.438
Slin_5169
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1029 aa)
         
  0.433
Slin_4250
Methionine synthase (1261 aa)
           
  0.432
Slin_1189
Hypothetical protein (513 aa)
   
          0.419
Slin_3490
Hypothetical protein (264 aa)
 
          0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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