STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0994PFAM: Di-haem cytochrome c peroxidase; KEGG: sse:Ssed_1107 cytochrome-c peroxidase. (626 aa)    
Predicted Functional Partners:
Slin_2382
KEGG: mno:Mnod_0281 protein of unknown function DUF839.
 
     0.737
Slin_3490
KEGG: hypothetical protein.
 
     0.699
Slin_0993
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pin:Ping_3229 tRNA/rRNA methyltransferase (SpoU).
       0.658
Slin_4665
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00138 TonB-dependent receptor.
 
     0.527
Slin_0992
PFAM: surface antigen (D15); KEGG: hch:HCH_05243 outer membrane protein/protective antigen OMA87.
       0.488
Slin_4532
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bba:Bd2648 outer membrane iron(III) dicitrate receptor.
 
     0.472
Slin_4495
KEGG: nmu:Nmul_A0462 hypothetical protein.
 
     0.420
Slin_3562
KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3- type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
   
  
 0.414
Slin_6216
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: phosphoesterase; KEGG: bpd:BURPS668_A2873 putative lipoprotein.
  
 
 0.401
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.