STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1007PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_3534 short-chain dehydrogenase. (233 aa)    
Predicted Functional Partners:
Slin_4558
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: scl:sce8810 short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.723
Slin_2838
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr3057 3-ketoacyl-(acyl-carrier-protein) reductase.
  
     0.689
Slin_6445
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_2996 short-chain dehydrogenase/reductase SDR.
  
 
   0.627
Slin_5157
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1301 short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.626
Slin_0199
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mll2041 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.604
Slin_1923
Hypothetical protein; KEGG: sde:Sde_3885 TetR family transcriptional regulator.
  
     0.589
Slin_1924
PFAM: ABC-1 domain protein; KEGG: sde:Sde_3886 unusual protein kinase-like.
  
 
   0.588
folE
KEGG: sed:SeD_A2542 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I.
   
 
 0.573
Slin_0497
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_1536 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.565
Slin_1005
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: Pts; 6-pyruvoyl-tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase.
  
 
 0.552
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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