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Slin_1007 protein (Spirosoma linguale) - STRING interaction network
"Slin_1007" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1007Short-chain dehydrogenase/reductase SDR (233 aa)    
Predicted Functional Partners:
Slin_2838
Short-chain dehydrogenase/reductase SDR (258 aa)
   
          0.746
Slin_4558
Short-chain dehydrogenase/reductase SDR (240 aa)
 
 
  0.734
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
 
  0.728
Slin_5157
Short-chain dehydrogenase/reductase SDR (224 aa)
   
          0.703
Slin_6445
Short-chain dehydrogenase/reductase SDR (272 aa)
 
 
  0.664
folE
GTP cyclohydrolase I (241 aa)
   
      0.654
Slin_2448
Short-chain dehydrogenase/reductase SDR (257 aa)
 
 
  0.633
Slin_0497
Short-chain dehydrogenase/reductase SDR (360 aa)
 
 
  0.611
Slin_6109
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (718 aa)
   
 
  0.591
Slin_4424
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (811 aa)
   
 
  0.591
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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