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Slin_1017 protein (Spirosoma linguale) - STRING interaction network
"Slin_1017" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1017ECF subfamily RNA polymerase sigma-24 subunit (200 aa)    
Predicted Functional Partners:
Slin_1016
Hypothetical protein (561 aa)
              0.859
Slin_4632
ECF subfamily RNA polymerase sigma-24 subunit (181 aa)
   
          0.772
Slin_5141
ECF subfamily RNA polymerase sigma-24 subunit (196 aa)
   
          0.769
Slin_0974
ECF subfamily RNA polymerase sigma-24 subunit (190 aa)
   
          0.765
Slin_3071
ECF subfamily RNA polymerase sigma-24 subunit (184 aa)
   
          0.762
Slin_6609
ECF subfamily RNA polymerase sigma-24 subunit (180 aa)
   
          0.761
Slin_3656
ECF subfamily RNA polymerase sigma-24 subunit (183 aa)
   
          0.757
Slin_6032
ECF subfamily RNA polymerase sigma-24 subunit (199 aa)
   
          0.754
Slin_0072
ECF subfamily RNA polymerase sigma-24 subunit (154 aa)
   
          0.729
Slin_0307
ECF subfamily RNA polymerase sigma-24 subunit (186 aa)
   
          0.727
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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