STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1019PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein. (393 aa)    
Predicted Functional Partners:
Slin_0557
KEGG: afw:Anae109_3266 hypothetical protein.
     0.772
Slin_1470
PFAM: Uncharacterised conserved protein UCP014753; KEGG: sde:Sde_3947 hypothetical protein.
     0.763
kduI
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.664
Slin_4715
KEGG: sde:Sde_1284 hypothetical protein.
     0.630
Slin_0624
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sde:Sde_1285 beta-galactosidase/beta- glucuronidase-like; Belongs to the glycosyl hydrolase 2 family.
     0.485
Slin_1245
PFAM: KDPG and KHG aldolase; KEGG: ccs:CCNA_01562 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase.
  
 0.461
Slin_0456
PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.
  
     0.449
Slin_1020
PFAM: acriflavin resistance protein; KEGG: mca:MCA2131 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.442
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.