STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1024PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein. (644 aa)    
Predicted Functional Partners:
Slin_1253
PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family.
     0.977
Slin_4784
PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family.
     0.959
Slin_1242
PFAM: lipolytic protein G-D-S-L family; KEGG: sde:Sde_3094 GntR family transcriptional regulator.
     0.913
Slin_5374
PFAM: glycoside hydrolase family 28; KEGG: Os09g0439400; hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
     0.891
Slin_4787
PFAM: Pectinesterase; KEGG: xcb:XC_0125 pectin methylesterase-like protein.
    0.877
Slin_4788
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3601 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43I; Belongs to the glycosyl hydrolase 43 family.
     0.856
kduI
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.768
Slin_1231
Lysophospholipase L1 and related esterase-like protein; KEGG: hypothetical protein.
 
     0.752
Slin_1241
KEGG: cja:CJA_3115 putative lipoprotein.
 
     0.598
Slin_1247
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: yen:YE3707 altronate oxidoreductase.
 
    0.597
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.