STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1069Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (375 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
  0.967
Slin_3895
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
 
0.926
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
 
0.926
Slin_3948
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sea:SeAg_B1541 mandelate racemase/muconate lactonizing enzyme, C-domain protein.
  
  
  0.921
Slin_0416
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: csa:Csal_1735 altronate dehydratase.
  
 
 0.910
Slin_3404
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sde:Sde_2646 phosphatidylserine decarboxylase.
  
 
  0.910
Slin_4785
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1735 altronate dehydratase.
  
 
 0.910
Slin_6198
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ect:ECIAI39_0671 putative short-chain dehydrogenase/reductase SDR precursor.
  
 
  0.910
Slin_1057
PFAM: PfkB domain protein; KEGG: xom:XOO_0027 2-keto-3-deoxygluconate kinase.
 
  
 0.848
Slin_1246
PFAM: PfkB domain protein; KEGG: smt:Smal_2071 PfkB domain protein.
 
  
 0.836
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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