STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1107PFAM: oxidoreductase domain protein; KEGG: spe:Spro_4569 oxidoreductase domain- containing protein. (360 aa)    
Predicted Functional Partners:
Slin_1263
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mll3360 D-tagatose 3-epimerase.
  
    0.572
Slin_1106
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pmu:PM1075 hypothetical protein.
       0.536
Slin_0510
PFAM: oxidoreductase domain protein; KEGG: smd:Smed_3325 oxidoreductase domain- containing protein.
  
     0.532
Slin_0509
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: smd:Smed_5868 xylose isomerase domain- containing protein.
  
    0.467
Slin_3435
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA1398 putativeoxidoreductase.
  
     0.465
Slin_1807
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
  
    0.436
Slin_4072
PFAM: oxidoreductase domain protein; KEGG: bra:BRADO7044 oxidoreductase.
  
     0.420
Slin_1668
PFAM: Phytanoyl-CoA dioxygenase; KEGG: ara:Arad_3386 hypothetical protein.
  
    0.412
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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