STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1109PFAM: nitrogen-fixing NifU domain protein; KEGG: dvm:DvMF_0997 nitrogen-fixing NifU domain protein. (88 aa)    
Predicted Functional Partners:
Slin_1110
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     
 0.722
Slin_5009
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bba:Bd0026 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
  
 
 0.652
Slin_5294
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: bba:Bd0026 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
  
 
 0.652
Slin_1345
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_1041 4Fe-4S ferredoxin, iron-sulfur binding protein.
  
  
 0.586
Slin_4913
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: PT repeat family protein.
  
  
 0.586
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.586
Slin_1829
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: hypothetical protein LOC100209598; Belongs to the IlvD/Edd family.
  
 
 0.579
ilvD
KEGG: pin:Ping_2151 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.579
Slin_1111
PFAM: GSCFA domain protein; KEGG: pfo:Pfl01_2272 hypothetical protein.
       0.539
Slin_3021
PFAM: HesB/YadR/YfhF-family protein; KEGG: ott:OTT_0571 HesB protein.
  
 
 0.536
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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