STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1152PFAM: alpha/beta hydrolase fold; KEGG: glo:Glov_1002 alpha/beta hydrolase fold. (239 aa)    
Predicted Functional Partners:
Slin_1151
Hypothetical protein.
       0.714
Slin_3239
PFAM: alpha/beta hydrolase fold; KEGG: sil:SPO3831 alpha/beta fold family hydrolase.
  
     0.641
Slin_5471
PFAM: alpha/beta hydrolase fold; KEGG: bcj:BCAL2536A putative hydrolase.
  
     0.613
Slin_1150
Hypothetical protein; KEGG: similar to mucin 19.
       0.482
Slin_1153
PFAM: aminotransferase class-III; KEGG: aav:Aave_1164 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.477
Slin_1535
TIGRFAM: 3-oxoadipate enol-lactonase; 4- carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold; KEGG: reh:H16_B2288 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
 
  
 0.439
Slin_1154
PFAM: protein of unknown function DUF433; KEGG: rpe:RPE_2627 protein of unknown function DUF433.
       0.426
Slin_1155
KEGG: rpa:RPA2819 hypothetical protein.
       0.426
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.