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Slin_1208 protein (Spirosoma linguale) - STRING interaction network
"Slin_1208" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1208ECF subfamily RNA polymerase sigma-24 subunit (195 aa)    
Predicted Functional Partners:
Slin_1209
Peptidase S1 and S6 chymotrypsin/Hap (337 aa)
 
          0.893
Slin_1741
Hypothetical protein (977 aa)
   
          0.757
Slin_0526
Hypothetical protein (354 aa)
   
          0.756
Slin_5680
Hypothetical protein (125 aa)
   
          0.719
Slin_1448
Cytochrome C biogenesis protein CcmB (224 aa)
   
          0.708
Slin_5238
Hypothetical protein (150 aa)
   
          0.688
Slin_2495
Hypothetical protein (204 aa)
   
          0.688
Slin_0714
Hypothetical protein (109 aa)
   
          0.681
Slin_1525
Hypothetical protein (855 aa)
   
          0.680
Slin_3835
Hypothetical protein (137 aa)
   
          0.654
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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