STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1209PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: dvu:DVU1468 peptidase/PDZ domain-containing protein. (337 aa)    
Predicted Functional Partners:
Slin_5152
Protease Do; KEGG: pau:PA14_54390 serine protease MucD precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
  
  
 
0.928
Slin_1208
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sit:TM1040_2177 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.893
Slin_1388
Glycosyl transferase family 51; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
  
    0.708
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.652
Slin_2964
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: reh:H16_A1096 DNA-directed RNA polymerase sigma subunit (RpoE,sigma24); Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.562
Slin_1210
KEGG: late embryogenesis abundant domain-containing protein / LEA domain-containing protein.
       0.551
Slin_3255
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: xau:Xaut_1629 ECF subfamily RNA polymerase sigma-24 factor.
 
     0.549
Slin_6633
Hypothetical protein; KEGG: similar to Transmembrane and TPR repeat- containing protein 3.
  
 
 0.514
Slin_0554
PFAM: RagB/SusD domain protein.
 
   
 0.494
Slin_2434
PFAM: aminotransferase class V; KEGG: pca:Pcar_2772 aminotransferase.
    
  0.494
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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