STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1237PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cak:Caul_3612 alpha-N-arabinofuranosidase. (513 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.969
Slin_2419
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sit:TM1040_3871 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.838
Slin_4382
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.833
Slin_6560
Putative L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.833
uxaC
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
     
 0.828
uxaC-2
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
     
 0.828
Slin_1236
PFAM: class II aldolase/adducin family protein; KEGG: scl:sce3309 L-ribulose-5-phosphate 4- epimerase.
 
  
 0.805
Slin_4183
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: zgc:172049.
     
  0.800
Slin_1422
PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase.
 
  
 0.766
Slin_4720
PFAM: protein of unknown function DUF1680; KEGG: ecf:ECH74115_4952 hypothetical protein.
 
   
 0.765
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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