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Slin_1237 protein (Spirosoma linguale) - STRING interaction network
"Slin_1237" - alpha-L-arabinofuranosidase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1237alpha-L-arabinofuranosidase (513 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose (496 aa)
 
   
  0.969
Slin_1423
Xylan 1,4-beta-xylosidase (558 aa)
 
 
  0.958
Slin_6560
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose (499 aa)
       
  0.861
Slin_1422
Hypothetical protein (760 aa)
 
        0.854
Slin_4720
Hypothetical protein (655 aa)
 
        0.841
Slin_1236
Class II aldolase/adducin family protein (233 aa)
 
     
  0.836
Slin_4786
Glucuronate isomerase (477 aa)
   
   
    0.824
Slin_1060
Glucuronate isomerase (470 aa)
   
   
    0.824
Slin_6081
Glycoside hydrolase family protein (480 aa)
 
   
  0.806
Slin_2419
Beta-galactosidase (686 aa)
   
 
    0.804
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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