STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1237PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cak:Caul_3612 alpha-N-arabinofuranosidase. (513 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.970
Slin_2419
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sit:TM1040_3871 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.840
uxaC
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
   
 
 0.827
uxaC-2
PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase.
   
 
 0.827
Slin_4382
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.826
Slin_6560
Putative L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.826
Slin_1236
PFAM: class II aldolase/adducin family protein; KEGG: scl:sce3309 L-ribulose-5-phosphate 4- epimerase.
 
  
 0.818
xylA
KEGG: cja:CJA_3061 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
    
 0.812
xylA-2
KEGG: cja:CJA_3061 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
    
 0.812
Slin_4183
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: zgc:172049.
     
  0.800
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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