STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1251PFAM: sulfatase; KEGG: hypothetical protein. (485 aa)    
Predicted Functional Partners:
Slin_6430
PFAM: alpha-L-rhamnosidase; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
 
     0.849
Slin_1250
PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ses:SARI_01155 hypothetical protein.
 
    
0.793
Slin_1433
PFAM: protein of unknown function DUF323; KEGG: mxa:MXAN_3662 hypothetical protein.
 
   0.730
Slin_1249
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
 
     0.656
Slin_3063
PFAM: protein of unknown function DUF323; KEGG: glo:Glov_1169 protein of unknown function DUF323.
 
   0.524
Slin_3225
PFAM: protein of unknown function DUF323; KEGG: GD13538 gene product from transcript GD13538- RA.
 
   0.508
Slin_0901
PFAM: Radical SAM domain protein; KEGG: pzu:PHZ_c2389 hypothetical protein.
 
   0.493
Slin_1864
PFAM: protein of unknown function DUF323; KEGG: dal:Dalk_3476 protein of unknown function DUF323.
 
   0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.