STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1257PFAM: glycoside hydrolase family 2 sugar binding; KEGG: hypothetical protein. (1347 aa)    
Predicted Functional Partners:
Slin_1258
PFAM: glycoside hydrolase family 3 domain protein; KEGG: tau:Tola_1809 glycoside hydrolase family 3 domain protein.
       0.689
Slin_4382
L-fucose isomerase-like protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.685
Slin_6560
Putative L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.667
Slin_1801
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: avn:Avin_09150 RhaT L-rhamnose-proton symport 2.
 
     0.630
Slin_6430
PFAM: alpha-L-rhamnosidase; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
  
     0.541
Slin_3393
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; Belongs to the glycosyl hydrolase 43 family.
 
      0.539
Slin_1249
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
 
     0.535
Slin_3580
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.
 
     0.535
Slin_1805
Sugar (pentulose and hexulose) kinase-like protein; KEGG: avi:Avi_6271 sugar kinase.
 
   
 0.523
Slin_1256
PFAM: putative esterase; glycoside hydrolase family 13 domain protein; KEGG: eca:ECA1873 putative glycosyl hydrolase exoenzyme.
       0.512
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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