STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1269Hypothetical protein. (111 aa)    
Predicted Functional Partners:
Slin_1268
Hypothetical protein.
       0.773
Slin_1271
Transcriptional regulator, Crp/Fnr family; PFAM: response regulator receiver; cyclic nucleotide-binding; regulatory protein Crp; SMART: response regulator receiver; cyclic nucleotide-binding; regulatory protein Crp; KEGG: lch:Lcho_2296 response regulator receiver sensor signal transduction histidine kinase.
  
  
 0.554
Slin_1270
KEGG: psa:PST_1123 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
       0.528
Slin_0646
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mxa:MXAN_1564 alkyl hydroperoxide reductase C.
  
 0.523
Slin_0701
Peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: rpi:Rpic_0704 peroxidase.
  
 0.523
Slin_6359
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.510
Slin_4066
PFAM: Thioredoxin domain; KEGG: AGAP012940-PA.
  
 
 0.457
Slin_4973
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cff:CFF8240_1087 thiol:disulfide interchange protein DsbD.
  
 
 0.457
Slin_1435
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: xau:Xaut_2904 pyridine nucleotide-disulphide oxidoreductase dimerisation region.
   
 0.444
Slin_5752
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ara:Arad_2251 dihydrolipoamide dehydrogenase.
   
 0.444
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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