STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1307TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: scl:sce3596 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 0.979
Slin_0245
TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region; KEGG: glo:Glov_1621 signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.951
Slin_4434
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dat:HRM2_22410 outer membrane protein (putative surface antigen).
 
 
 0.907
Slin_0992
PFAM: surface antigen (D15); KEGG: hch:HCH_05243 outer membrane protein/protective antigen OMA87.
 
 
 0.888
Slin_5438
PFAM: cell surface receptor IPT/TIG domain protein; KEGG: scl:sce5067 hypothetical protein.
  
 
 0.888
Slin_4371
PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: scl:sce0352 hypothetical protein.
  
 
 0.886
Slin_5123
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: cja:CJA_2276 serine/threonine protein kinase.
   
 
 0.862
Slin_1309
KEGG: nha:Nham_0177 OstA-like protein.
 
  
 0.838
Slin_4719
TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region; KEGG: set:SEN2562 signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.783
Slin_1528
KEGG: gsu:GSU1489 hypothetical protein.
  
     0.767
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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