STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1324PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pat:Patl_3493 ATPase. (327 aa)    
Predicted Functional Partners:
Slin_1323
PFAM: protein of unknown function DUF58; KEGG: pat:Patl_3494 hypothetical protein.
 
  
 0.910
Slin_6105
KEGG: mxa:MXAN_5665 hypothetical protein.
 
  
 0.793
Slin_4278
KEGG: afw:Anae109_4421 hypothetical protein.
 
  
 0.681
Slin_1325
KEGG: sml:Smlt0128 hypothetical protein.
 
     0.654
Slin_6107
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein.
 
  
 0.617
Slin_2667
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: dps:DP0639 hypothetical protein.
 
   
 0.566
Slin_1321
KEGG: xac:XAC0115 hypothetical protein.
 
  
 0.546
Slin_1322
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: afw:Anae109_4420 hypothetical protein.
  
  
 0.461
Slin_1320
KEGG: xcb:XC_0088 hypothetical protein.
       0.412
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.