STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1372PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: hypothetical protein. (252 aa)    
Predicted Functional Partners:
Slin_6191
PFAM: Domain of unknown function DUF1793; KEGG: hypothetical protein.
  
    0.568
Slin_0638
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bbt:BBta_7586 putative glycerophosphoryl diester phosphodiesterase.
 
      0.550
Slin_1371
PFAM: glucose-methanol-choline oxidoreductase; KEGG: swd:Swoo_0367 glucose-methanol-choline oxidoreductase.
       0.542
Slin_1373
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.495
Slin_0022
PFAM: RagB/SusD domain protein.
  
     0.489
Slin_5893
KEGG: hypothetical protein.
 
 
  
 0.485
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.