STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1388Glycosyl transferase family 51; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. (759 aa)    
Predicted Functional Partners:
Slin_5835
TIGRFAM: DivIVA domain; PFAM: DivIVA family protein; KEGG: mxa:MXAN_3112 cell-division initiation protein DivIVA.
   
 
 0.869
Slin_1280
PFAM: penicillin-binding protein transpeptidase; KEGG: dat:HRM2_12700 FtsW; Belongs to the SEDS family.
 
 
 
 0.846
Slin_1387
Hypothetical protein.
       0.768
Slin_1209
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: dvu:DVU1468 peptidase/PDZ domain-containing protein.
  
    0.708
Slin_0554
PFAM: RagB/SusD domain protein.
  
     0.642
Slin_4799
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: rfe:RF_0310 TPR repeat-containing protein.
 
     0.635
Slin_1299
PFAM: protein of unknown function DUF1239.
   
 
 0.605
Slin_5589
Putative phage repressor; PFAM: Peptidase S24, S26A and S26B, conserved region; SMART: helix-turn-helix domain protein; KEGG: sbn:Sbal195_2020 putative phage repressor.
  
     0.605
Slin_6234
PFAM: Peptidase M23; KEGG: smt:Smal_3409 peptidase M23.
  
   
 0.561
Slin_0325
PFAM: cell surface receptor IPT/TIG domain protein; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel.
  
     0.558
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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