STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1422PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase. (760 aa)    
Predicted Functional Partners:
Slin_1420
PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
    0.851
Slin_1419
PFAM: Glycoside hydrolase 97; KEGG: cja:CJA_0817 alpha-glucosidase, putative, adg97A.
 
     0.849
Slin_1423
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_1655 translation initiation factor IF- 1; Belongs to the glycosyl hydrolase 43 family.
 
     0.799
Slin_1237
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cak:Caul_3612 alpha-N-arabinofuranosidase.
 
  
 0.766
Slin_0353
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0822 alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
     0.761
Slin_1421
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hypothetical protein, conserved.
       0.727
Slin_1718
KEGG: pzu:PHZ_c2479 hypothetical protein.
 
     0.678
Slin_1231
Lysophospholipase L1 and related esterase-like protein; KEGG: hypothetical protein.
  
    0.673
Slin_3393
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; Belongs to the glycosyl hydrolase 43 family.
 
     0.623
Slin_1418
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: scl:sce9311 hypothetical protein.
 
     0.615
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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