STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1444KEGG: rlt:Rleg2_2832 hypothetical protein. (65 aa)    
Predicted Functional Partners:
Slin_1441
Hypothetical protein.
       0.773
Slin_1442
PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF.
       0.773
Slin_1443
KEGG: rpe:RPE_2423 hypothetical protein.
       0.773
Slin_1445
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.773
Slin_1446
Hypothetical protein.
       0.727
Slin_1447
PFAM: cytochrome c assembly protein; KEGG: dvm:DvMF_3129 cytochrome c assembly protein.
       0.547
Slin_1440
PFAM: transporter-associated region; CBS domain containing protein; protein of unknown function DUF21; KEGG: sit:TM1040_1427 hypothetical protein.
       0.520
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.455
Slin_1448
PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: mxa:MXAN_3257 heme exporter protein CcmB.
       0.406
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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