STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1470PFAM: Uncharacterised conserved protein UCP014753; KEGG: sde:Sde_3947 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Slin_1806
PFAM: glycosyl hydrolase family 88; KEGG: ppr:PBPRB0150 hypothetical protein.
     0.820
Slin_1019
PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.
     0.763
Slin_0551
PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.
     0.690
Slin_0456
PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.
 
     0.560
Slin_1469
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: gsu:GSU0101 ABC transporter, ATP- binding/permease protein.
       0.520
Slin_2475
PFAM: RagB/SusD domain protein.
  
     0.514
Slin_2473
PFAM: RagB/SusD domain protein.
  
     0.509
Slin_2474
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.506
Slin_2476
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.502
Slin_3081
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; Belongs to the glycosyl hydrolase 43 family.
 
     0.501
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.