STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1497Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: hypothetical protein. (389 aa)    
Predicted Functional Partners:
Slin_3463
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: hch:HCH_04098 molybdopterin/thiamine biosynthesis family protein.
   
 0.974
Slin_6576
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SMART: Rhodanese domain protein; KEGG: acp:A2cp1_3646 UBA/ThiF-type NAD/FAD binding protein.
   
 0.974
Slin_4680
Cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpt:Bpet2777 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.918
Slin_4051
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: kpe:KPK_1257 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.915
Slin_5128
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein; KEGG: sde:Sde_2886 putative phenylacetic acid degradation NADH oxidoreductase.
  
 0.762
Slin_5188
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein; Ferric reductase NAD binding; KEGG: azo:azo0308 phenylacetic acid degradation NADH oxidoreductase PaaE.
  
 0.762
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
  
 0.727
Slin_3269
PFAM: ferredoxin; KEGG: ferredoxin.
  
 0.726
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.713
Slin_5822
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bba:Bd1193 scaffold protein for iron-sulfur cluster assembly; Belongs to the HesB/IscA family.
 
  
 0.688
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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