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Slin_1548 protein (Spirosoma linguale) - STRING interaction network
"Slin_1548" - Catechol 2,3-dioxygenase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1548Catechol 2,3-dioxygenase (330 aa)    
Predicted Functional Partners:
Slin_2319
Glutamate synthase (1524 aa)
     
 
  0.980
Slin_1549
Hypothetical protein (156 aa)
              0.850
Slin_1547
Hypothetical protein (384 aa)
 
   
  0.845
Slin_2256
methylmalonyl-CoA mutase (1110 aa)
 
   
  0.787
Slin_4022
LmbE family protein (238 aa)
 
          0.755
Slin_6640
methylmalonyl-CoA mutase large subunit (724 aa)
   
   
  0.731
Slin_4024
6-phosphogluconate dehydrogenase (263 aa)
 
          0.713
Slin_0184
Hypothetical protein (917 aa)
   
          0.680
Slin_4061
Hypothetical protein (1351 aa)
   
          0.652
Slin_4023
Dimethylmenaquinone methyltransferase (198 aa)
 
     
  0.641
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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