STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1557PFAM: amidohydrolase 2; KEGG: dac:Daci_4537 amidohydrolase 2. (289 aa)    
Predicted Functional Partners:
Slin_1560
PFAM: AMP-dependent synthetase and ligase; KEGG: lch:Lcho_0993 feruloyl-CoA synthase.
 
  
 0.864
Slin_1562
KEGG: rpa:RPA1785 hypothetical protein; Belongs to the UPF0311 family.
 
  
 0.836
Slin_1534
4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; KEGG: reu:Reut_B4006 4-hydroxybenzoate 3- monooxygenase.
 
  
 0.798
Slin_4021
Catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3819 metapyrocatechase.
 
   
 0.778
Slin_1561
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_3111 enoyl-CoA hydratase.
 
    0.760
Slin_1548
Catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3819 metapyrocatechase.
 
   
 0.752
Slin_1542
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ppu:PP_3199 hypothetical protein.
 
  
 0.726
Slin_4025
PFAM: protein of unknown function DUF453; KEGG: csa:Csal_0328 methylitaconate delta2-delta3- isomerase.
 
   
 0.725
Slin_4024
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: spe:Spro_2089 phosphogluconate dehydrogenase, NAD-binding, putative-like protein.
 
     0.673
Slin_1538
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pol:Bpro_0627 protocatechuate 3,4- dioxygenase, beta subunit.
  
     0.663
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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