STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1567PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reh:H16_B2109 outer membrane receptor, TonB dependent. (780 aa)    
Predicted Functional Partners:
Slin_1566
PFAM: periplasmic binding protein; KEGG: pla:Plav_0182 periplasmic binding protein.
 
  
 0.625
Slin_1565
PFAM: transport system permease protein; KEGG: pmy:Pmen_0994 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.620
Slin_1564
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl01_4798 hemin importer ATP-binding subunit.
 
  
 0.603
Slin_1569
KEGG: amc:MADE_01526 glycosyl hydrolase, BNR repeat- containing protein.
 
     0.492
Slin_1568
Hypothetical protein.
       0.469
Slin_1571
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pag:PLES_50951 haem/haemoglobin uptake outer membrane receptor PhuR precursor.
 
     0.432
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.