STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1663PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_1305 lysine exporter protein (LysE/YggA). (212 aa)    
Predicted Functional Partners:
Slin_5230
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: avi:Avi_5260 hypothetical protein.
  
     0.666
Slin_1664
PFAM: GH3 auxin-responsive promoter; KEGG: afr:AFE_0805 auxin-responsive GH3-related protein.
 
   
 0.647
Slin_6144
KEGG: msl:Msil_0816 hypothetical protein.
 
     0.601
Slin_5182
KEGG: bte:BTH_I3215 hypothetical protein.
  
     0.600
Slin_5597
KEGG: hypothetical protein.
  
     0.593
Slin_1662
PFAM: NUDIX hydrolase; KEGG: mca:MCA0333 MutT/NUDIX family protein.
       0.574
Slin_1115
KEGG: viral A-type inclusion protein.
  
     0.571
Slin_1743
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: GF25073 gene product from transcript GF25073- RA.
  
     0.557
Slin_1796
KEGG: bba:Bd1703 hypothetical protein.
  
    0.547
Slin_2311
KEGG: hypothetical protein LOC100169082.
  
     0.545
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.