STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1691PFAM: SMC domain protein; KEGG: ajs:Ajs_0828 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Slin_1690
Hypothetical protein.
       0.779
Slin_3409
PFAM: protein of unknown function DUF262; KEGG: dat:HRM2_15010 hypothetical protein.
 
     0.718
Slin_1689
DNA uptake protein and related DNA-binding protein-like protein; KEGG: azo:azo1659 transcription accessory protein.
       0.636
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.551
Slin_4456
PFAM: YcfA family protein; KEGG: dal:Dalk_0033 YcfA family protein.
  
     0.503
Slin_3088
Site-specific DNA-methyltransferase (adenine- specific); PFAM: N-6 DNA methylase; putative RNA methylase; KEGG: glo:Glov_1415 N-6 DNA methylase.
 
     0.498
Slin_5825
PFAM: SMC domain protein; KEGG: hch:HCH_03469 ATPase.
 
     0.472
Slin_3086
Type I site-specific deoxyribonuclease; KEGG: glo:Glov_1416 EcoEI R domain protein; PFAM: EcoEI R domain protein; protein of unknown function DUF450; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase.
 
     0.448
Slin_4613
PFAM: SMC domain protein; KEGG: aav:Aave_0765 hypothetical protein.
 
     0.441
Slin_3089
PFAM: restriction modification system DNA specificity domain; KEGG: efe:EFER_3081 specificity determinant for HsdM and HsdR (modular protein).
 
     0.429
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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