STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1779PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: bja:bll4323 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Slin_1781
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: xca:xccb100_4142 TolB-like protein.
 
 
 0.652
Slin_3220
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: cti:RALTA_B1852 peptidoglycan glycosyltransferase.
 
  
 0.646
Slin_3074
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dia:Dtpsy_1674 peptidoglycan glycosyltransferase.
 
  
 0.643
Slin_3202
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gur:Gura_2858 peptidoglycan glycosyltransferase.
 
 
 0.617
Slin_1780
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: acp:A2cp1_4094 thioredoxin reductase.
  
    0.612
Slin_5203
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
 
 
 0.599
Slin_4398
PFAM: Peptidase M23; KEGG: cvi:CV_3353 hypothetical protein.
 
   
 0.587
Slin_2266
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   
 0.557
Slin_5235
PFAM: protein of unknown function DUF349; KEGG: hypothetical protein.
 
  
 0.535
Slin_1108
D-alanine--D-alanine ligase domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.534
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.