STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1780TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: acp:A2cp1_4094 thioredoxin reductase. (323 aa)    
Predicted Functional Partners:
Slin_0530
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: afw:Anae109_1372 thioredoxin; Belongs to the thioredoxin family.
 
 0.969
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.909
Slin_5637
Cystathionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_3845 cystathionine gamma-lyase.
   
 
 0.905
Slin_0166
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: reh:H16_B1515 cysteine desulfurase (SufS); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.903
Slin_2612
PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase.
  
 
  0.903
Slin_2354
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_2119 alcohol dehydrogenase, zinc- binding.
 
    
 0.830
Slin_3939
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase.
    
 0.719
Slin_6383
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: asu:Asuc_1845 thioredoxin; Belongs to the thioredoxin family.
 
 
 0.701
Slin_1779
PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: bja:bll4323 hypothetical protein.
  
    0.612
Slin_0646
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mxa:MXAN_1564 alkyl hydroperoxide reductase C.
  
 
 0.606
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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