STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1845Hypothetical protein. (98 aa)    
Predicted Functional Partners:
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: maq:Maqu_1870 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 
 0.900
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: bac:BamMC406_5585 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.894
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.893
rpsI
PFAM: ribosomal protein S9; KEGG: sat:SYN_00233 SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.890
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: prw:PsycPRwf_0001 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.889
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.886
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.886
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dal:Dalk_1907 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.885
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: cak:Caul_4888 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.884
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.884
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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