STRINGSTRING
Slin_1878 protein (Spirosoma linguale) - STRING interaction network
"Slin_1878" - alpha-L-fucosidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1878alpha-L-fucosidase (825 aa)    
Predicted Functional Partners:
Slin_3894
Coagulation factor 5/8 type domain-containing protein (688 aa)
 
   
    0.939
Slin_0308
alpha-L-fucosidase (463 aa)
 
   
    0.938
Slin_1415
Coagulation factor 5/8 type domain-containing protein (698 aa)
 
   
    0.936
Slin_2796
alpha-L-fucosidase (581 aa)
 
   
    0.910
Slin_1127
alpha-L-fucosidase (479 aa)
 
   
    0.876
Slin_1484
alpha-L-fucosidase (842 aa)
   
   
 
0.816
Slin_5006
alpha-L-fucosidase (864 aa)
   
   
 
0.816
Slin_4039
Glycoside hydrolase family protein (811 aa)
 
          0.687
Slin_1719
Glycoside hydrolase family protein (922 aa)
 
          0.656
Slin_1422
Hypothetical protein (760 aa)
 
          0.635
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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