STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1878Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B. (825 aa)    
Predicted Functional Partners:
Slin_2796
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); coagulation factor 5/8 type domain protein; KEGG: ara:Arad_8058 alpha-L-fucosidase protein.
  
 
  0.964
Slin_0308
Alpha-L-fucosidase; PFAM: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein; K01206 alpha-L- fucosidase.
 
  0.959
Slin_3894
PFAM: coagulation factor 5/8 type domain protein; KEGG: xcv:XCV1357 hypothetical protein.
 
  0.955
Slin_1415
PFAM: coagulation factor 5/8 type domain protein; KEGG: xcv:XCV1357 hypothetical protein.
 
  0.951
Slin_1127
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: ara:Arad_8058 alpha-L-fucosidase protein.
  
 
  0.944
Slin_1484
Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.
  
  
 
0.908
Slin_5006
Alpha-L-fucosidase; KEGG: xac:XAC1774 hypothetical protein.
  
  
 
0.908
Slin_0353
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0822 alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.558
Slin_1418
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: scl:sce9311 hypothetical protein.
     0.548
Slin_1422
PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase.
 
     0.537
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.