STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1923Hypothetical protein; KEGG: sde:Sde_3885 TetR family transcriptional regulator. (218 aa)    
Predicted Functional Partners:
Slin_1924
PFAM: ABC-1 domain protein; KEGG: sde:Sde_3886 unusual protein kinase-like.
 
     0.906
Slin_1007
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_3534 short-chain dehydrogenase.
  
     0.589
Slin_1922
KEGG: mca:MCA0315 hypothetical protein.
       0.526
Slin_2050
PFAM: Insertion element protein; KEGG: nse:NSE_0489 hypothetical protein.
  
     0.456
Slin_5676
KEGG: rso:RS02124 hypothetical protein.
  
     0.449
Slin_5347
KEGG: ilo:IL2050 hypothetical protein.
 
     0.438
Slin_5875
Hypothetical protein.
  
     0.438
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.