STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1926KEGG: glo:Glov_2685 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family. (371 aa)    
Predicted Functional Partners:
Slin_4694
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
  
 0.945
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate- independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.914
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.906
Slin_1742
PFAM: Aldehyde Dehydrogenase; KEGG: pol:Bpro_5303 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.904
Slin_3069
PFAM: Aldehyde Dehydrogenase; KEGG: dat:HRM2_38600 NAD-dependent aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.904
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.901
Slin_5385
PFAM: amidohydrolase; KEGG: asa:ASA_1709 dihydroorotase.
 
  
 0.717
Slin_1925
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: ecy:ECSE_1367 putative dehydrogenase.
 
     0.622
Slin_1927
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: gbm:Gbem_3026 CMP/dCMP deaminase zinc-binding.
       0.619
Slin_4890
TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: bba:Bd1766 putative translation initiation inhibitor.
 
 
    0.609
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.