STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1950Peptidase S15; KEGG: tau:Tola_1930 peptidase S15. (372 aa)    
Predicted Functional Partners:
Slin_1948
PFAM: Cupin 2 conserved barrel domain protein; KEGG: dvm:DvMF_2945 cupin 2 conserved barrel domain protein.
    0.795
Slin_2195
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mes:Meso_3909 cupin 2, conserved barrel.
    0.766
Slin_1951
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mno:Mnod_8329 cupin 2 conserved barrel domain protein.
 
    0.719
Slin_0089
Hypothetical protein.
     
 0.700
Slin_5511
PFAM: phospholipase/Carboxylesterase; KEGG: abm:ABSDF1529 putative carboxylesterase.
     
 0.700
Slin_2640
Hypothetical protein.
    
 0.677
Slin_3541
TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; hydroxyethylthiazole kinase; KEGG: gbm:Gbem_3234 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.657
Slin_1276
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bcj:BCAS0499 putative exported monooxygenase.
     0.640
Slin_2181
KEGG: lhk:LHK_02162 hypothetical protein.
 
    0.594
Slin_0169
Hypothetical protein.
   
    0.568
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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