STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1970Hypothetical protein; KEGG: dps:DPPA08 related to DNA primase PrmN1 (partial length). (306 aa)    
Predicted Functional Partners:
Slin_1916
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.841
Slin_1971
PFAM: DNA repair protein RadC; KEGG: mxa:MXAN_1952 DNA repair protein RadC.
     
 0.758
Slin_5872
PFAM: integrase family protein; KEGG: she:Shewmr4_1694 phage integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.731
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.725
Slin_1976
KEGG: ajs:Ajs_4192 TrwC protein; TIGRFAM: conjugative relaxase domain protein; PFAM: TrwC relaxase; SMART: AAA ATPase.
 
  
 0.709
Slin_1953
PFAM: integrase family protein; KEGG: seh:SeHA_C1600 phage integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.686
Slin_1969
KEGG: sbn:Sbal195_3111 hypothetical protein.
     
 0.643
Slin_1987
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.640
Slin_1972
PFAM: domain of unknown function DUF1738; KEGG: mes:Meso_3793 domain of unknown function DUF1738.
 
     0.604
Slin_4979
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.490
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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