STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1971PFAM: DNA repair protein RadC; KEGG: mxa:MXAN_1952 DNA repair protein RadC. (157 aa)    
Predicted Functional Partners:
Slin_0362
TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bba:Bd0469 maf protein; Belongs to the Maf family.
  
  
 0.771
Slin_1970
Hypothetical protein; KEGG: dps:DPPA08 related to DNA primase PrmN1 (partial length).
     
 0.758
Slin_5926
PFAM: Rod shape-determining protein MreC; KEGG: mxa:MXAN_2645 rod shape-determining protein MreC.
  
  
 0.754
Slin_5516
KEGG: sfu:Sfum_3894 phosphoribosyltransferase.
 
    0.742
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.665
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.659
Slin_1969
KEGG: sbn:Sbal195_3111 hypothetical protein.
       0.593
Slin_1972
PFAM: domain of unknown function DUF1738; KEGG: mes:Meso_3793 domain of unknown function DUF1738.
       0.568
Slin_2383
KEGG: gme:Gmet_0890 smf protein; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; SMART: Helix-hairpin-helix DNA-binding class 1.
  
  
 0.491
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.