STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1978KEGG: nmu:Nmul_B2799 hypothetical protein. (504 aa)    
Predicted Functional Partners:
Slin_1977
Hypothetical protein.
       0.727
Slin_0057
PFAM: protein of unknown function DUF262; KEGG: sbm:Shew185_0970 hypothetical protein.
   
 
 0.595
Slin_3409
PFAM: protein of unknown function DUF262; KEGG: dat:HRM2_15010 hypothetical protein.
   
 
 0.595
Slin_4047
KEGG: spl:Spea_2304 hypothetical protein.
   
 
 0.595
Slin_5662
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mxa:MXAN_1486 HNH endonuclease domain- containing protein.
   
 
 0.595
Slin_6233
PFAM: protein of unknown function DUF262; KEGG: sbn:Sbal195_4642 hypothetical protein.
   
 
 0.595
Slin_1976
KEGG: ajs:Ajs_4192 TrwC protein; TIGRFAM: conjugative relaxase domain protein; PFAM: TrwC relaxase; SMART: AAA ATPase.
     
 0.530
Slin_1979
Hypothetical protein.
       0.510
Slin_3007
PFAM: Patatin; KEGG: mxa:MXAN_3852 patatin-like phospholipase family protein.
    
   0.489
Slin_4239
PFAM: Patatin; KEGG: tdn:Suden_1321 patatin.
    
   0.489
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.