STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1990Hypothetical protein. (82 aa)    
Predicted Functional Partners:
Slin_1989
KEGG: eba:ebA2146 regulator protein; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; PAS fold domain protein; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type; PAS domain containing protein.
       0.757
Slin_5875
Hypothetical protein.
  
     0.756
Slin_2995
Hypothetical protein.
  
     0.736
Slin_6104
Hypothetical protein.
  
     0.710
Slin_4892
KEGG: ubiquitin-protein ligase 1; K10592 E3 ubiquitin-protein ligase HUWE1.
  
     0.665
Slin_0285
KEGG: avn:Avin_18240 hypothetical protein.
  
     0.660
Slin_5838
KEGG: har:HEAR2453 hypothetical protein.
  
     0.654
Slin_5597
KEGG: hypothetical protein.
  
     0.642
Slin_5836
PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
  
     0.640
Slin_3043
PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: nmc:NMC1418 putative membrane peptidase.
  
     0.638
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.