STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (220 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
 
 0.821
Slin_1996
TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: sfu:Sfum_1671 FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
       0.812
Slin_1995
Hypothetical protein; KEGG: ngk:NGK_1616 TonB.
  
    0.809
rpmD
TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: rbo:A1I_02125 50S ribosomal protein L30.
   
    0.691
Slin_3445
PFAM: protein of unknown function DUF88; Cold-shock protein DNA-binding; KEGG: dal:Dalk_1950 cold-shock DNA-binding domain protein.
  
  
 0.678
Slin_5890
PFAM: Fmu (Sun) domain protein; KEGG: vfi:VF_1274 rRNA (cytosine-C(5)-)- methyltransferase RsmF.
 
 
 0.641
Slin_1688
TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; putative RNA methylase; KEGG: dol:Dole_1585 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.603
Slin_5630
KEGG: gme:Gmet_3528 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like.
   
 
 0.590
Slin_1434
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2630 ABC transporter-related protein.
  
    0.551
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.538
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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