STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2005KEGG: geo:Geob_0289 putative outer membrane protein. (192 aa)    
Predicted Functional Partners:
Slin_2006
Hypothetical protein.
       0.581
Slin_2004
PFAM: conserved hypothetical protein; KEGG: pfl:PFL_0750 hypothetical protein.
       0.532
Slin_5260
KEGG: psa:PST_2891 glycosyltransferase.
  
     0.498
Slin_0280
PFAM: glycosyl transferase group 1; KEGG: psa:PST_2891 glycosyltransferase.
  
     0.497
Slin_1031
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; GAF domain protein; KEGG: gme:Gmet_2642 GAF sensor hybrid histidine kinase.
  
     0.492
Slin_2003
PFAM: RES domain protein; KEGG: kpe:KPK_A0046 RES domain protein.
       0.488
Slin_1035
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: pfl:PFL_3251 sensor histidine kinase/response regulator.
  
     0.487
Slin_3666
PFAM: cyclase/dehydrase; Polyketide cyclase/dehydrase; KEGG: geo:Geob_0283 cyclase/dehydrase.
 
    0.447
Slin_2814
KEGG: afw:Anae109_3731 hypothetical protein.
  
     0.445
Slin_2007
HPr kinase; KEGG: xac:XAC0062 hypothetical protein.
       0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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