Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slin_2011PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_3546 glycosyl transferase, family 2. (335 aa)    
Predicted Functional Partners:
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mxa:MXAN_0395 glutamate-1-semialdehyde aminotransferase.
       0.789
Slin_2013
KEGG: tgr:Tgr7_2227 hypothetical protein.
     
 0.783
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
      0.781
Slin_4274
PFAM: glycosyl transferase family 2; KEGG: fph:Fphi_1266 glycosyl transferase family protein.
  
    0.680
Slin_4932
PFAM: glycosyl transferase family 2; KEGG: fph:Fphi_1478 glycosyl transferase family protein.
  
    0.667
Slin_4931
PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3219 glycosyl transferase family protein.
  
    0.655
Slin_5207
PFAM: glycosyl transferase family 2; KEGG: ade:Adeh_3050 glycosyl transferase family protein.
  
    0.607
Slin_2592
PFAM: glycosyl transferase family 2; KEGG: rma:Rmag_0889 glycosyl transferase family protein.
  
    0.562
Slin_6302
PFAM: glycosyl transferase family 2; KEGG: bph:Bphy_1225 glycosyl transferase family protein.
 
     0.546
yidC
Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
   
   0.541
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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