STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mxa:MXAN_0395 glutamate-1-semialdehyde aminotransferase. (451 aa)    
Predicted Functional Partners:
Slin_5386
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: bba:Bd3444 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.991
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.986
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.952
Slin_0478
TIGRFAM: siroheme synthase; KEGG: par:Psyc_1065 uroporphyrinogen-III C- methyltransferase / precorrin-2 dehydrogenase.
   
 0.888
Slin_5012
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase.
    
 0.878
Slin_2013
KEGG: tgr:Tgr7_2227 hypothetical protein.
       0.799
Slin_2011
PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_3546 glycosyl transferase, family 2.
       0.790
Slin_5405
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: eca:ECA2989 uroporphyrin-III C- methyltransferase.
 
   
 0.695
Slin_3791
PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mll6746 pristinamycin I synthase 3.
 
  
 0.693
Slin_2052
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: apa:APP7_1934 uroporphyrin-III C- methyltransferase.
 
   
 0.686
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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